diff --git a/LUFA.pnproj b/LUFA.pnproj
index 478637e8b3..8cddbe4557 100644
--- a/LUFA.pnproj
+++ b/LUFA.pnproj
@@ -1 +1 @@
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path="LUFA\Drivers\USB\Class\Host\CDC.h"></File><File path="LUFA\Drivers\USB\Class\Host\HID.c"></File><File path="LUFA\Drivers\USB\Class\Host\HID.h"></File><File path="LUFA\Drivers\USB\Class\Host\MassStorage.c"></File><File path="LUFA\Drivers\USB\Class\Host\MassStorage.h"></File><File path="LUFA\Drivers\USB\Class\Host\StillImage.c"></File><File path="LUFA\Drivers\USB\Class\Host\StillImage.h"></File><File path="LUFA\Drivers\USB\Class\Host\MIDI.c"></File><File path="LUFA\Drivers\USB\Class\Host\MIDI.h"></File><File path="LUFA\Drivers\USB\Class\Host\Printer.c"></File><File path="LUFA\Drivers\USB\Class\Host\Printer.h"></File><File path="LUFA\Drivers\USB\Class\Host\RNDIS.h"></File><File path="LUFA\Drivers\USB\Class\Host\RNDIS.c"></File></Folder><Folder name="Common"><File path="LUFA\Drivers\USB\Class\Common\Audio.h"></File><File path="LUFA\Drivers\USB\Class\Common\CDC.h"></File><File path="LUFA\Drivers\USB\Class\Common\HID.h"></File><File path="LUFA\Drivers\USB\Class\Common\MassStorage.h"></File><File path="LUFA\Drivers\USB\Class\Common\MIDI.h"></File><File path="LUFA\Drivers\USB\Class\Common\RNDIS.h"></File><File path="LUFA\Drivers\USB\Class\Common\StillImage.h"></File><File path="LUFA\Drivers\USB\Class\Common\Printer.h"></File><File path="LUFA\Drivers\USB\Class\Common\RNDISConstants.h"></File></Folder><File path="LUFA\Drivers\USB\Class\Audio.h"></File><File path="LUFA\Drivers\USB\Class\CDC.h"></File><File path="LUFA\Drivers\USB\Class\HID.h"></File><File path="LUFA\Drivers\USB\Class\MassStorage.h"></File><File path="LUFA\Drivers\USB\Class\MIDI.h"></File><File path="LUFA\Drivers\USB\Class\RNDIS.h"></File><File path="LUFA\Drivers\USB\Class\StillImage.h"></File><File path="LUFA\Drivers\USB\Class\Printer.h"></File></Folder><File path="LUFA\Drivers\USB\USB.h"></File></Folder><Folder name="Misc"><File path="LUFA\Drivers\Misc\TerminalCodes.h"></File></Folder><Folder name="Board"><Folder name="USBKEY"><File path="LUFA\Drivers\Board\USBKEY\Dataflash.h"></File><File path="LUFA\Drivers\Board\USBKEY\Joystick.h"></File><File path="LUFA\Drivers\Board\USBKEY\AT45DB642D.h"></File><File path="LUFA\Drivers\Board\USBKEY\LEDs.h"></File><File path="LUFA\Drivers\Board\USBKEY\Buttons.h"></File></Folder><Folder name="STK526"><File path="LUFA\Drivers\Board\STK526\Dataflash.h"></File><File path="LUFA\Drivers\Board\STK526\Joystick.h"></File><File path="LUFA\Drivers\Board\STK526\AT45DB642D.h"></File><File path="LUFA\Drivers\Board\STK526\LEDs.h"></File><File path="LUFA\Drivers\Board\STK526\Buttons.h"></File></Folder><Folder name="STK525"><File path="LUFA\Drivers\Board\STK525\Dataflash.h"></File><File path="LUFA\Drivers\Board\STK525\Joystick.h"></File><File path="LUFA\Drivers\Board\STK525\AT45DB321C.h"></File><File path="LUFA\Drivers\Board\STK525\LEDs.h"></File><File path="LUFA\Drivers\Board\STK525\Buttons.h"></File></Folder><Folder name="RZUSBSTICK"><File path="LUFA\Drivers\Board\RZUSBSTICK\LEDs.h"></File></Folder><Folder name="ATAVRUSBRF01"><File path="LUFA\Drivers\Board\ATAVRUSBRF01\LEDs.h"></File><File path="LUFA\Drivers\Board\ATAVRUSBRF01\Buttons.h"></File></Folder><Folder name="BUMBLEB"><File path="LUFA\Drivers\Board\BUMBLEB\Buttons.h"></File><File path="LUFA\Drivers\Board\BUMBLEB\Joystick.h"></File><File path="LUFA\Drivers\Board\BUMBLEB\LEDs.h"></File></Folder><Folder name="XPLAIN"><File path="LUFA\Drivers\Board\XPLAIN\LEDs.h"></File><File path="LUFA\Drivers\Board\XPLAIN\AT45DB642D.h"></File><File path="LUFA\Drivers\Board\XPLAIN\Dataflash.h"></File></Folder><Folder name="EVK527"><File path="LUFA\Drivers\Board\EVK527\Buttons.h"></File><File path="LUFA\Drivers\Board\EVK527\LEDs.h"></File><File path="LUFA\Drivers\Board\EVK527\Joystick.h"></File><File path="LUFA\Drivers\Board\EVK527\AT45DB321C.h"></File><File path="LUFA\Drivers\Board\EVK527\Dataflash.h"></File></Folder><File path="LUFA\Drivers\Board\Temperature.h"></File><File path="LUFA\Drivers\Board\Dataflash.h"></File><File path="LUFA\Drivers\Board\Joystick.h"></File><File path="LUFA\Drivers\Board\Temperature.c"></File><File path="LUFA\Drivers\Board\LEDs.h"></File><File path="LUFA\Drivers\Board\Buttons.h"></File></Folder><Folder name="Peripheral"><Folder name="AVRU4U6U7"><File path="LUFA\Drivers\Peripheral\AVRU4U6U7\ADC.h"></File></Folder><File path="LUFA\Drivers\Peripheral\ADC.h"></File><File path="LUFA\Drivers\Peripheral\Serial.c"></File><File path="LUFA\Drivers\Peripheral\Serial.h"></File><File path="LUFA\Drivers\Peripheral\SPI.h"></File><File path="LUFA\Drivers\Peripheral\SerialStream.c"></File><File path="LUFA\Drivers\Peripheral\SerialStream.h"></File></Folder></Folder><Folder name="DriverStubs"><File path="LUFA\DriverStubs\Dataflash.h"></File><File path="LUFA\DriverStubs\Joystick.h"></File><File path="LUFA\DriverStubs\LEDs.h"></File><File path="LUFA\DriverStubs\Buttons.h"></File></Folder><Folder name="ManPages"><File path="LUFA\ManPages\AboutLUFA.txt"></File><File path="LUFA\ManPages\BuildingLinkableLibraries.txt"></File><File path="LUFA\ManPages\ChangeLog.txt"></File><File path="LUFA\ManPages\CompileTimeTokens.txt"></File><File path="LUFA\ManPages\DevelopingWithLUFA.txt"></File><File path="LUFA\ManPages\DeviceSupport.txt"></File><File path="LUFA\ManPages\DirectorySummaries.txt"></File><File path="LUFA\ManPages\Donating.txt"></File><File path="LUFA\ManPages\FutureChanges.txt"></File><File path="LUFA\ManPages\GettingStarted.txt"></File><File path="LUFA\ManPages\Groups.txt"></File><File path="LUFA\ManPages\LibraryResources.txt"></File><File path="LUFA\ManPages\LUFAPoweredProjects.txt"></File><File path="LUFA\ManPages\MainPage.txt"></File><File path="LUFA\ManPages\MigrationInformation.txt"></File><File path="LUFA\ManPages\VIDAndPIDValues.txt"></File><File path="LUFA\ManPages\WritingBoardDrivers.txt"></File><File path="LUFA\ManPages\ConfiguringApps.txt"></File><File path="LUFA\ManPages\CompilingApps.txt"></File><File path="LUFA\ManPages\ProgrammingApps.txt"></File><File path="LUFA\ManPages\LibraryApps.txt"></File><File path="LUFA\ManPages\Licence.txt"></File><File path="LUFA\ManPages\WhyUseLUFA.txt"></File><File path="LUFA\ManPages\LUFAvsAtmelStack.txt"></File><File path="LUFA\ManPages\AlternativeStacks.txt"></File></Folder><Folder name="Scheduler"><File path="LUFA\Scheduler\Scheduler.c"></File><File path="LUFA\Scheduler\Scheduler.h"></File></Folder><File path="LUFA\makefile"></File><File path="LUFA\Version.h"></File><File path="LUFA\Doxygen.conf"></File></Folder><Folder name="Bootloaders"><Folder name="DFU"><File path="Bootloaders\DFU\BootloaderDFU.c"></File><File path="Bootloaders\DFU\BootloaderDFU.h"></File><File path="Bootloaders\DFU\Descriptors.c"></File><File path="Bootloaders\DFU\Descriptors.h"></File><File path="Bootloaders\DFU\makefile"></File><File path="Bootloaders\DFU\BootloaderDFU.txt"></File><File path="Bootloaders\DFU\Doxygen.conf"></File></Folder><Folder name="CDC"><File path="Bootloaders\CDC\BootloaderCDC.c"></File><File path="Bootloaders\CDC\BootloaderCDC.h"></File><File path="Bootloaders\CDC\Descriptors.c"></File><File path="Bootloaders\CDC\Descriptors.h"></File><File path="Bootloaders\CDC\makefile"></File><File path="Bootloaders\CDC\LUFA CDC Bootloader.inf"></File><File path="Bootloaders\CDC\Doxygen.conf"></File><File path="Bootloaders\CDC\BootloaderCDC.txt"></File></Folder><Folder name="TeensyHID"><File path="Bootloaders\TeensyHID\Descriptors.c"></File><File path="Bootloaders\TeensyHID\Descriptors.h"></File><File path="Bootloaders\TeensyHID\makefile"></File><File path="Bootloaders\TeensyHID\TeensyHID.c"></File><File path="Bootloaders\TeensyHID\TeensyHID.h"></File><File path="Bootloaders\TeensyHID\TeensyHID.txt"></File></Folder><Folder name="Incomplete"><Folder name="MIDI"><Folder name="JavaHost"><File path="Bootloaders\Incomplete\MIDI\JavaHost\BIN2BOOT.java"></File><File path="Bootloaders\Incomplete\MIDI\JavaHost\MIDIMessageReceiver.java"></File></Folder><File path="Bootloaders\Incomplete\MIDI\BootloaderMIDI.c"></File><File path="Bootloaders\Incomplete\MIDI\BootloaderMIDI.h"></File><File path="Bootloaders\Incomplete\MIDI\Descriptors.c"></File><File path="Bootloaders\Incomplete\MIDI\Descriptors.h"></File><File path="Bootloaders\Incomplete\MIDI\Doxygen.conf"></File><File path="Bootloaders\Incomplete\MIDI\makefile"></File><File path="Bootloaders\Incomplete\MIDI\MIDI.c"></File></Folder></Folder><File path="Bootloaders\makefile"></File></Folder><Folder name="Projects"><Folder name="AVRISP"><Folder name="Lib"><Folder name="ISP"><File path="Projects\AVRISP\Lib\ISP\ISPProtocol.c"></File><File path="Projects\AVRISP\Lib\ISP\ISPProtocol.h"></File><File path="Projects\AVRISP\Lib\ISP\ISPTarget.c"></File><File path="Projects\AVRISP\Lib\ISP\ISPTarget.h"></File></Folder><Folder name="PDI"><File path="Projects\AVRISP\Lib\PDI\PDIProtocol.c"></File><File path="Projects\AVRISP\Lib\PDI\PDIProtocol.h"></File><File path="Projects\AVRISP\Lib\PDI\PDITarget.c"></File><File path="Projects\AVRISP\Lib\PDI\PDITarget.h"></File><File path="Projects\AVRISP\Lib\PDI\XMEGANVM.c"></File><File path="Projects\AVRISP\Lib\PDI\XMEGANVM.h"></File></Folder><Folder name="TPI"><File path="Projects\AVRISP\Lib\TPI\TINYNVM.c"></File><File path="Projects\AVRISP\Lib\TPI\TINYNVM.h"></File><File path="Projects\AVRISP\Lib\TPI\TPIProtocol.c"></File><File path="Projects\AVRISP\Lib\TPI\TPIProtocol.h"></File><File path="Projects\AVRISP\Lib\TPI\TPITarget.c"></File><File path="Projects\AVRISP\Lib\TPI\TPITarget.h"></File></Folder><File path="Projects\AVRISP\Lib\V2Protocol.c"></File><File path="Projects\AVRISP\Lib\V2Protocol.h"></File><File path="Projects\AVRISP\Lib\V2ProtocolConstants.h"></File><File path="Projects\AVRISP\Lib\V2ProtocolParams.c"></File><File path="Projects\AVRISP\Lib\V2ProtocolParams.h"></File></Folder><File path="Projects\AVRISP\AVRISP.c"></File><File path="Projects\AVRISP\AVRISP.h"></File><File path="Projects\AVRISP\AVRISP.txt"></File><File path="Projects\AVRISP\Descriptors.c"></File><File path="Projects\AVRISP\Descriptors.h"></File><File path="Projects\AVRISP\Doxygen.conf"></File><File path="Projects\AVRISP\makefile"></File></Folder><Folder name="Benito"><Folder name="Board"><File path="Projects\Benito\Board\LEDs.h"></File></Folder><Folder name="Lib"><File path="Projects\Benito\Lib\RingBuff.c"></File><File path="Projects\Benito\Lib\RingBuff.h"></File></Folder><File path="Projects\Benito\Benito.c"></File><File path="Projects\Benito\Benito.h"></File><File path="Projects\Benito\Descriptors.c"></File><File path="Projects\Benito\Descriptors.h"></File><File path="Projects\Benito\Doxygen.conf"></File><File path="Projects\Benito\makefile"></File><File path="Projects\Benito\Benito.txt"></File><File path="Projects\Benito\Benito Programmer.inf"></File></Folder><Folder name="LEDNotifier"><Folder name="Board"><File path="Projects\LEDNotifier\Board\LEDs.h"></File></Folder><Folder name="CPUUsageApp"><File path="Projects\LEDNotifier\CPUUsageApp\CPUMonitor.cs"></File><File path="Projects\LEDNotifier\CPUUsageApp\CPUMonitor.csproj"></File><File path="Projects\LEDNotifier\CPUUsageApp\CPUMonitor.Designer.cs"></File><File path="Projects\LEDNotifier\CPUUsageApp\CPUMonitor.resx"></File><File path="Projects\LEDNotifier\CPUUsageApp\Program.cs"></File></Folder><Folder name="HotmailNotifierApp"><File path="Projects\LEDNotifier\HotmailNotifierApp\MailNotifier.cs"></File><File path="Projects\LEDNotifier\HotmailNotifierApp\MailNotifier.csproj"></File><File path="Projects\LEDNotifier\HotmailNotifierApp\MailNotifier.Designer.cs"></File><File path="Projects\LEDNotifier\HotmailNotifierApp\MailNotifier.resx"></File><File path="Projects\LEDNotifier\HotmailNotifierApp\Program.cs"></File></Folder><Folder name="LEDMixerApp"><File path="Projects\LEDNotifier\LEDMixerApp\LEDMixer.cs"></File><File path="Projects\LEDNotifier\LEDMixerApp\LEDMixer.csproj"></File><File path="Projects\LEDNotifier\LEDMixerApp\LEDMixer.Designer.cs"></File><File path="Projects\LEDNotifier\LEDMixerApp\LEDMixer.resx"></File><File path="Projects\LEDNotifier\LEDMixerApp\Program.cs"></File></Folder><File path="Projects\LEDNotifier\Descriptors.c"></File><File path="Projects\LEDNotifier\Descriptors.h"></File><File path="Projects\LEDNotifier\Doxygen.conf"></File><File path="Projects\LEDNotifier\LEDNotifier.c"></File><File path="Projects\LEDNotifier\LEDNotifier.h"></File><File path="Projects\LEDNotifier\LEDNotifier.txt"></File><File path="Projects\LEDNotifier\LUFA LED Notifier.inf"></File><File path="Projects\LEDNotifier\makefile"></File></Folder><Folder name="MagStripe"><Folder name="Lib"><File path="Projects\Magstripe\Lib\CircularBitBuffer.c"></File><File path="Projects\Magstripe\Lib\CircularBitBuffer.h"></File><File path="Projects\Magstripe\Lib\MagstripeHW.h"></File></Folder><File path="Projects\Magstripe\Descriptors.c"></File><File path="Projects\Magstripe\Descriptors.h"></File><File path="Projects\Magstripe\Magstripe.c"></File><File path="Projects\Magstripe\Magstripe.h"></File><File path="Projects\Magstripe\makefile"></File><File path="Projects\Magstripe\Magstripe.txt"></File><File path="Projects\Magstripe\Doxygen.conf"></File></Folder><Folder name="MissileLauncher"><File path="Projects\MissileLauncher\ConfigDescriptor.c"></File><File path="Projects\MissileLauncher\ConfigDescriptor.h"></File><File path="Projects\MissileLauncher\Doxygen.conf"></File><File path="Projects\MissileLauncher\makefile"></File><File path="Projects\MissileLauncher\MissileLauncher.c"></File><File path="Projects\MissileLauncher\MissileLauncher.h"></File><File path="Projects\MissileLauncher\MissileLauncher.txt"></File></Folder><Folder name="USBtoSerial"><Folder name="Lib"><File path="Projects\USBtoSerial\Lib\RingBuff.c"></File><File path="Projects\USBtoSerial\Lib\RingBuff.h"></File></Folder><File path="Projects\USBtoSerial\Descriptors.c"></File><File path="Projects\USBtoSerial\Descriptors.h"></File><File path="Projects\USBtoSerial\Doxygen.conf"></File><File path="Projects\USBtoSerial\LUFA USBtoSerial.inf"></File><File path="Projects\USBtoSerial\makefile"></File><File path="Projects\USBtoSerial\USBtoSerial.c"></File><File path="Projects\USBtoSerial\USBtoSerial.h"></File><File path="Projects\USBtoSerial\USBtoSerial.txt"></File></Folder><Folder name="XPLAINBridge"><Folder name="Lib"><File path="Projects\XPLAINBridge\Lib\RingBuff.c"></File><File path="Projects\XPLAINBridge\Lib\RingBuff.h"></File><File path="Projects\XPLAINBridge\Lib\SoftUART.c"></File><File path="Projects\XPLAINBridge\Lib\SoftUART.h"></File></Folder><File path="Projects\XPLAINBridge\Descriptors.c"></File><File path="Projects\XPLAINBridge\Descriptors.h"></File><File path="Projects\XPLAINBridge\LUFA XPLAIN Bridge.inf"></File><File path="Projects\XPLAINBridge\makefile"></File><File path="Projects\XPLAINBridge\XPLAINBridge.c"></File><File path="Projects\XPLAINBridge\XPLAINBridge.h"></File><File path="Projects\XPLAINBridge\XPLAINBridge.txt"></File></Folder><Folder name="Incomplete"><Folder name="StandaloneProgrammer"><Folder name="Lib"><Folder name="PetiteFATFs"><File path="Projects\Incomplete\StandaloneProgrammer\Lib\PetiteFATFs\diskio.c"></File><File path="Projects\Incomplete\StandaloneProgrammer\Lib\PetiteFATFs\diskio.h"></File><File path="Projects\Incomplete\StandaloneProgrammer\Lib\PetiteFATFs\integer.h"></File><File path="Projects\Incomplete\StandaloneProgrammer\Lib\PetiteFATFs\pff.c"></File><File path="Projects\Incomplete\StandaloneProgrammer\Lib\PetiteFATFs\pff.h"></File></Folder><File path="Projects\Incomplete\StandaloneProgrammer\Lib\DataflashManager.c"></File><File path="Projects\Incomplete\StandaloneProgrammer\Lib\DataflashManager.h"></File><File path="Projects\Incomplete\StandaloneProgrammer\Lib\SCSI.c"></File><File path="Projects\Incomplete\StandaloneProgrammer\Lib\SCSI.h"></File><File path="Projects\Incomplete\StandaloneProgrammer\Lib\ProgrammerConfig.c"></File><File path="Projects\Incomplete\StandaloneProgrammer\Lib\ProgrammerConfig.h"></File></Folder><File path="Projects\Incomplete\StandaloneProgrammer\Descriptors.c"></File><File path="Projects\Incomplete\StandaloneProgrammer\Descriptors.h"></File><File path="Projects\Incomplete\StandaloneProgrammer\makefile"></File><File path="Projects\Incomplete\StandaloneProgrammer\StandaloneProgrammer.c"></File><File path="Projects\Incomplete\StandaloneProgrammer\StandaloneProgrammer.h"></File><File path="Projects\Incomplete\StandaloneProgrammer\DiskDevice.c"></File><File path="Projects\Incomplete\StandaloneProgrammer\DiskDevice.h"></File><File path="Projects\Incomplete\StandaloneProgrammer\DiskHost.c"></File><File path="Projects\Incomplete\StandaloneProgrammer\DiskHost.h"></File></Folder></Folder><File path="Projects\makefile"></File></Folder><File path="makefile"></File><File path="README.txt"></File></Project>
\ No newline at end of file
diff --git a/Projects/AVRISP/Lib/ISP/ISPProtocol.h b/Projects/AVRISP/Lib/ISP/ISPProtocol.h
index 85a669a4ec..caadf412a4 100644
--- a/Projects/AVRISP/Lib/ISP/ISPProtocol.h
+++ b/Projects/AVRISP/Lib/ISP/ISPProtocol.h
@@ -39,7 +39,9 @@
 	/* Includes: */
 		#include <avr/io.h>
 		
-		#include "V2Protocol.h"
+		#include <LUFA/Drivers/USB/USB.h>
+
+		#include "../V2Protocol.h"
 		
 	/* Preprocessor Checks: */
 		#if ((BOARD == BOARD_XPLAIN) || (BOARD == BOARD_XPLAIN_REV1))
diff --git a/Projects/AVRISP/Lib/ISP/ISPTarget.h b/Projects/AVRISP/Lib/ISP/ISPTarget.h
index 62d8bbb4bc..a2641c0898 100644
--- a/Projects/AVRISP/Lib/ISP/ISPTarget.h
+++ b/Projects/AVRISP/Lib/ISP/ISPTarget.h
@@ -43,9 +43,7 @@
 		#include <LUFA/Drivers/USB/USB.h>
 		#include <LUFA/Drivers/Peripheral/SPI.h>
 		
-		#include "../Descriptors.h"
-		#include "V2ProtocolConstants.h"
-		#include "V2ProtocolParams.h"
+		#include "../V2ProtocolParams.h"
 
 	/* Preprocessor Checks: */
 		#if ((BOARD == BOARD_XPLAIN) || (BOARD == BOARD_XPLAIN_REV1))
diff --git a/Projects/AVRISP/Lib/PDI/PDIProtocol.h b/Projects/AVRISP/Lib/PDI/PDIProtocol.h
index c1fbef466a..c3cafb4ecd 100644
--- a/Projects/AVRISP/Lib/PDI/PDIProtocol.h
+++ b/Projects/AVRISP/Lib/PDI/PDIProtocol.h
@@ -40,8 +40,10 @@
 		#include <avr/io.h>
 		#include <util/delay.h>
 		#include <stdio.h>
+		
+		#include <LUFA/Drivers/USB/USB.h>
 	
-		#include "V2Protocol.h"
+		#include "../V2Protocol.h"
 		#include "PDITarget.h"
 		#include "XMEGANVM.h"
 
diff --git a/Projects/AVRISP/Lib/TPI/TPIProtocol.h b/Projects/AVRISP/Lib/TPI/TPIProtocol.h
index 2b6849c1ef..11894a3333 100644
--- a/Projects/AVRISP/Lib/TPI/TPIProtocol.h
+++ b/Projects/AVRISP/Lib/TPI/TPIProtocol.h
@@ -40,8 +40,9 @@
 		#include <avr/io.h>
 		#include <util/delay.h>
 		#include <stdio.h>
-	
-		#include "V2Protocol.h"
+	
+		#include <LUFA/Drivers/USB/USB.h>
+
 		#include "TPITarget.h"
 		#include "TINYNVM.h"
 
diff --git a/Projects/AVRISP/Lib/V2Protocol.h b/Projects/AVRISP/Lib/V2Protocol.h
index ef4d2eb63a..c7c1a7350e 100644
--- a/Projects/AVRISP/Lib/V2Protocol.h
+++ b/Projects/AVRISP/Lib/V2Protocol.h
@@ -43,9 +43,9 @@
 		#include "../Descriptors.h"
 		#include "V2ProtocolConstants.h"
 		#include "V2ProtocolParams.h"
-		#include "ISPProtocol.h"
-		#include "PDIProtocol.h"
-		#include "TPIProtocol.h"
+		#include "ISP/ISPProtocol.h"
+		#include "PDI/PDIProtocol.h"
+		#include "TPI/TPIProtocol.h"
 
 	/* Preprocessor Checks: */
 		#if ((BOARD == BOARD_XPLAIN) || (BOARD == BOARD_XPLAIN_REV1))
diff --git a/Projects/AVRISP/Lib/V2ProtocolParams.h b/Projects/AVRISP/Lib/V2ProtocolParams.h
index 428c1d4673..14ff56c71a 100644
--- a/Projects/AVRISP/Lib/V2ProtocolParams.h
+++ b/Projects/AVRISP/Lib/V2ProtocolParams.h
@@ -48,7 +48,7 @@
 		
 		#include "V2Protocol.h"
 		#include "V2ProtocolConstants.h"
-		#include "ISPTarget.h"
+		#include "ISP/ISPTarget.h"
 
 	/* Macros: */
 		/** Parameter privilege mask to allow the host PC to read the parameter's value */
diff --git a/Projects/AVRISP/makefile b/Projects/AVRISP/makefile
index d0bce5b64d..6f8ee40311 100644
--- a/Projects/AVRISP/makefile
+++ b/Projects/AVRISP/makefile
@@ -129,14 +129,14 @@ SRC = $(TARGET).c                                                 \
 	  Descriptors.c                                               \
       Lib/V2Protocol.c                                            \
       Lib/V2ProtocolParams.c                                      \
-      Lib/ISPProtocol.c                                           \
-      Lib/ISPTarget.c                                             \
-	  Lib/PDIProtocol.c                                           \
-	  Lib/PDITarget.c                                             \
-	  Lib/XMEGANVM.c                                              \
-	  Lib/TPIProtocol.c                                           \
-	  Lib/TPITarget.c                                             \
-	  Lib/TINYNVM.c                                               \
+      Lib/ISP/ISPProtocol.c                                       \
+      Lib/ISP/ISPTarget.c                                         \
+	  Lib/PDI/PDIProtocol.c                                       \
+	  Lib/PDI/PDITarget.c                                         \
+	  Lib/PDI/XMEGANVM.c                                          \
+	  Lib/TPI/TPIProtocol.c                                       \
+	  Lib/TPI/TPITarget.c                                         \
+	  Lib/TPI/TINYNVM.c                                           \
 	  $(LUFA_PATH)/LUFA/Drivers/USB/LowLevel/DevChapter9.c        \
 	  $(LUFA_PATH)/LUFA/Drivers/USB/LowLevel/Endpoint.c           \
 	  $(LUFA_PATH)/LUFA/Drivers/USB/LowLevel/Host.c               \